PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SRS
Protein Properties Length: 169aa    MW: 16907.3 Da    PI: 6.9545
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011157.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702981.8e-301210966153
       DUF702  66 sa.aeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                  ++ +++++k++r    ++q+++s+t++s+++++++ +tss          lP +v+++avf+cvrv++v+dge+e+aYq++v+i+GhvfkG+LydqG+
  Pbr011157.1  12 NSgSTSSAKKPRL-IGASQTTTSHTSTSNTTPPRSYDTSSshqdagfkdpLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKINGHVFKGFLYDQGV 108
                  3325556666665.58899999****************999********************************************************9 PP

       DUF702 153 e 153
                  +
  Pbr011157.1 109 D 109
                  8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.6E-2612109IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.0E-2961108IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSAAAGGGAG SNSGSTSSAK KPRLIGASQT TTSHTSTSNT TPPRSYDTSS SHQDAGFKDP  60
LPGQVRAPAV FKCVRVTAVE DGEDEYAYQA VVKINGHVFK GFLYDQGVDG RDGFPNISEL  120
HLGGGGGTSS GGNGRRNAAS SPILDPSDVY AASGAGLLGG SNFGNPIN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369677.11e-115PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK94e-50LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A061GUQ32e-65A0A061GUQ3_THECC; Lateral root primordium protein-related isoform 1
STRINGGLYMA14G03900.19e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-42Lateral root primordium (LRP) protein-related